| MirGeneDB ID | Cja-Mir-580 |
|---|---|
| Family name | MIR-580 (all species) |
| Seed | UUGAGUC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-580 Mml-Mir-580 Pab-Mir-580 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 166252749-166252807 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUAAGUUAGAUAAAAUUUCUGAUAGGUACCUAAUGAUCAUAGACUCAGAUAUUUAAGUUAACAGUAUUUGAGUCUGAUGAAUCAUUAGGUUCCAAUCAUAAAUUUUUCAUUUGGUUUCAGet precursor sequence |
| Structure | 10 20 30 40 50
UUAAGUUAGAUAAAAUUUC-- A U - -| UUUAAG
UGAU GG ACCUAAUGA UCA UAGACUCAGAUA \
ACUA CC UGGAUUACU AGU GUCUGAGUUUAU U
ACUUUGGUUUACUUUUUAAAU A U A A^ GACAAU
110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Cja-Mir-580_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAUGAUCAUAGACUCAGAUA -21
Get sequence
|
| Mature sequence | Cja-Mir-580_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- UUUGAGUCUGAUGAAUCAUUAGG -59
Get sequence
|
