| MirGeneDB ID | Cja-Mir-580 |
|---|
| Family name |
MIR-580 (all species) |
|---|
| Seed |
UUGAGUC |
|---|
| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Hsa-Mir-580
Mml-Mir-580
Pab-Mir-580
|
|---|
| Node of Origin (locus) |
Simiiformes
|
|---|
| Node of Origin (family) |
Simiiformes
|
|---|
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 166252749-166252807 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUAAGUUAGAUAAAAUUUCUGAUAGGUACCUAAUGAUCAUAGACUCAGAUAUUUAAGUUAACAGUAUUUGAGUCUGAUGAAUCAUUAGGUUCCAAUCAUAAAUUUUUCAUUUGGUUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUAAGUUAGAUAAAAUUUC-- A U - -| UUUAAG
UGAU GG ACCUAAUGA UCA UAGACUCAGAUA \
ACUA CC UGGAUUACU AGU GUCUGAGUUUAU U
ACUUUGGUUUACUUUUUAAAU A U A A^ GACAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cja-Mir-580_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UAAUGAUCAUAGACUCAGAUA -21
Get sequence
|
|---|
| Mature sequence |
Cja-Mir-580_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- UUUGAGUCUGAUGAAUCAUUAGG -59
Get sequence
|
|---|
