| MirGeneDB ID | Pab-Mir-580 |
|---|
| Family name |
MIR-580 (all species) |
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| Seed |
UGAGUCU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cja-Mir-580
Hsa-Mir-580
Mml-Mir-580
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 36391217-36391277 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGAAGUUAGAUAAAAUUUCCAAUUGGAACCUAAUGAUUCAUCAGACUCAGAUAUUUAAGUUAACAGUAUUUGAGUCUGAUGAAUCAUUAGGUUCCAGUUAGAAAUUUUCAUUCAGUUUCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAAGUUAGAUAAAAUU--| C AUUUAAG
UC AAUUGGAACCUAAUGAUUCAUCAGACUCAGAU \
AG UUGACCUUGGAUUACUAAGUAGUCUGAGUUUA U
GACUUUGACUUACUUUUAA^ A UGACAAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-580_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UAAUGAUUCAUCAGACUCAGAU -22
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-580_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- UUGAGUCUGAUGAAUCAUUAGG -61
Get sequence
|
|---|
