| MirGeneDB ID | Pab-Mir-580 |
|---|---|
| Family name | MIR-580 (all species) |
| Seed | UGAGUCU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-580 Hsa-Mir-580 Mml-Mir-580 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 36391217-36391277 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGAAGUUAGAUAAAAUUUCCAAUUGGAACCUAAUGAUUCAUCAGACUCAGAUAUUUAAGUUAACAGUAUUUGAGUCUGAUGAAUCAUUAGGUUCCAGUUAGAAAUUUUCAUUCAGUUUCAGGet precursor sequence |
| Structure | 10 20 30 40 50
UGAAGUUAGAUAAAAUU--| C AUUUAAG
UC AAUUGGAACCUAAUGAUUCAUCAGACUCAGAU \
AG UUGACCUUGGAUUACUAAGUAGUCUGAGUUUA U
GACUUUGACUUACUUUUAA^ A UGACAAU
. 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Pab-Mir-580_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UAAUGAUUCAUCAGACUCAGAU -22
Get sequence
|
| Mature sequence | Pab-Mir-580_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UUGAGUCUGAUGAAUCAUUAGG -61
Get sequence
|
