| MirGeneDB ID | Cja-Mir-616 |
|---|
| Family name |
MIR-616 (all species) |
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| Seed |
CUCAAAA |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Hsa-Mir-616
Mml-Mir-616
Pab-Mir-616
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
|---|
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021923.1: 58617746-58617808 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGGUCAGUAAUUACCUUAGGUAAACCUCUGCUCAAAACCCUCCAGUGACUUCCAUGACAUGAAAUAGGAAUUCACUGGAGGAUUUUGAGCAGAGGAAUGACCUGUUUUAAAAGGCUCCUCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGGUCAGUAAUUACCU- AAA-| C C AUGACA
UAGGU CCUCUGCUCAAAA CCUCCAGUGA UUCC \
GUCCA GGAGACGAGUUUU GGAGGUCACU AAGG U
CCCUCCUCGGAAAAUUUU GUAA^ A U AUAAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Cja-Mir-616_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GCUCAAAACCCUCCAGUGACUUCC -24
Get sequence
|
|---|
| Star sequence |
Cja-Mir-616_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- AAUUCACUGGAGGAUUUUGAGCAG -63
Get sequence
|
|---|
