MirGeneDB ID | Pab-Mir-616 |
Family name |
MIR-616 (all species) |
Seed |
CUCAAAA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cja-Mir-616
Hsa-Mir-616
Mml-Mir-616
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054689.2: 55446770-55446832 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGUCAGGAAUUACCUUAGGUAAUUCCUCCACUCAAAACCCUCCAGUGACUUCCAUGACAUGAAAUAGGAAGUCAUUGGAGGGUUUUGAGCAGAGGAAUGACCUGUUUUAAAAGGCUCACUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGUCAGGAAUUACCUU--| A CA AUGACA
AGGU AUUCCUC CUCAAAACCCUCCAGUGACUUCC \
UCCA UAAGGAG GAGUUUUGGGAGGUUACUGAAGG U
ACUCACUCGGAAAAUUUUG^ G AC AUAAAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-616_5p (predicted) |
mirBase accession | None |
Sequence |
0- ACUCAAAACCCUCCAGUGACUUCC -24
Get sequence
|
Star sequence |
Pab-Mir-616_3p* |
mirBase accession | None |
Sequence |
39- AAGUCAUUGGAGGGUUUUGAGCAG -63
Get sequence
|