MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-616

Family name MIR-616 (all species)
Seed CUCAAAA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-616  Hsa-Mir-616  Mml-Mir-616 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054689.2: 55446770-55446832 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUCAGGAAUUACCUUAGGUAAUUCCUCCACUCAAAACCCUCCAGUGACUUCCAUGACAUGAAAUAGGAAGUCAUUGGAGGGUUUUGAGCAGAGGAAUGACCUGUUUUAAAAGGCUCACUCA
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Structure
        10          20        30        40        50        60 
UGGUCAGGAAUUACCUU--|   A       CA                       AUGACA 
                   AGGU AUUCCUC  CUCAAAACCCUCCAGUGACUUCC      \
                   UCCA UAAGGAG  GAGUUUUGGGAGGUUACUGAAGG      U
ACUCACUCGGAAAAUUUUG^   G       AC                       AUAAAG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-616_5p (predicted)

mirBase accessionNone
Sequence
0- ACUCAAAACCCUCCAGUGACUUCC -24
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Star sequence

Pab-Mir-616_3p*

mirBase accessionNone
Sequence
39- AAGUCAUUGGAGGGUUUUGAGCAG -63
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