| MirGeneDB ID | Cja-Mir-629 |
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| Family name |
MIR-629 (all species) |
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| Seed |
GGGUUUC |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Hsa-Mir-629
Mml-Mir-629
Pab-Mir-629
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 14613838-14613898 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCUCCAUAUCCCUUUCCCAGGGGGAGGGGCUGGGUUUCCAUUGGGAGAACUUUUACCUUGAACUGGGAGGUUCUCCCAUUGGAAACCCAGCCCCUCCCCUCUGCCUGCCUCAACCCUACAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCUCCAUAUCCCUUUCC- -| U UUACCUU
CAG GGGGAGGGGCUGGGUUUCCA UGGGAGAACUU \
GUC CCCCUCCCCGACCCAAAGGU ACCCUCUUGGA G
CACAUCCCAACUCCGUCC U^ U GGGUCAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Cja-Mir-629_5p |
| mirBase accession | None |
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| Sequence |
0- UGGGUUUCCAUUGGGAGAACUU -22
Get sequence
|
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| Star sequence |
Cja-Mir-629_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
39- GUUCUCCCAUUGGAAACCCAGC -61
Get sequence
|
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