MirGeneDB ID | Pab-Mir-629 |
Family name |
MIR-629 (all species) |
Seed |
GGGUUUA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cja-Mir-629
Hsa-Mir-629
Mml-Mir-629
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054695.2: 73292683-73292743 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCUUCAUGUCCCUUUCCCAGGGGAGGGGCUGGGUUUACAUUGGGAGAACUUUUACCGUGAACCAGGAGGUUCUCCCAACAUAAGCCCAGCCCCUCCCCUCUGCCUGCCUCAACCCUACAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCUUCAUGUCCCUUUCCC--| CA UUACCGU
AGGGGAGGGGCUGGGUUUA UUGGGAGAACUU \
UCCCCUCCCCGACCCGAAU AACCCUCUUGGA G
CACAUCCCAACUCCGUCCGUC^ AC GGACCAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-629_5p |
mirBase accession | None |
Sequence |
0- UGGGUUUACAUUGGGAGAACUU -22
Get sequence
|
Star sequence |
Pab-Mir-629_3p* (predicted) |
mirBase accession | None |
Sequence |
39- GUUCUCCCAACAUAAGCCCAGC -61
Get sequence
|