MirGeneDB ID | Cja-Mir-944 |
Family name |
MIR-944 (all species) |
Seed |
AAUUAUU |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Hsa-Mir-944
Mml-Mir-944
Pab-Mir-944
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021929.1: 12518616-12518675 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAAUUUGAAUUUAUAUUUUAGACACAUCUCAUCUAAUACACAAUAUUUUCUUAAAUGGUAUAAAGAGAAAUUAUUGUAUAUCAGAGGAGGUGUGUCUGGGAUUAAGUAUUAGCUGCACU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAAUUUGAAUUUAUAU--| A A C U UAAAUG
UUUAGACACAUCUC UCU AUA ACAAUA UUUCU G
GGGUCUGUGUGGAG AGA UAU UGUUAU AAAGA U
UCACGUCGAUUAUGAAUUA^ G C A U GAAAUA
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Cja-Mir-944_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAUCUAAUACACAAUAUUUUCU -22
Get sequence
|
Mature sequence |
Cja-Mir-944_3p (predicted) |
mirBase accession | None |
Sequence |
38- AAAUUAUUGUAUAUCAGAGGAG -60
Get sequence
|