| MirGeneDB ID | Cpi-Mir-1677-o8 |
|---|
| Family name |
MIR-1677 (all species) |
|---|
| Seed |
CUAAAUU |
|---|
| Species |
Western painted turtle (Chrysemys picta bellii) |
|---|
| MiRBase ID |
cpi-mir-1677h
|
|---|
| Paralogues |
Cpi-Mir-1677-o6
Cpi-Mir-1677-o7
Cpi-Mir-1677-P1a1
Cpi-Mir-1677-P1a2
Cpi-Mir-1677-P1b
Cpi-Mir-1677-P2
Cpi-Mir-1677-P4
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. picta
|
|---|
| Node of Origin (family) |
Diapsida
|
|---|
Genome context
(chrPic1) |
JH584557: 925315-925376 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAACCUUGUUUGGUAUGGCUCUGGGGCUCAACUGCUCUCCCAAUUAAGUCAGUUGGACUUUUGAUUUUGACUAAAUUGGGAGAAGGGUUGAGUCCUCUGGUGACCUGUUUGUCAACUGGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAACCUUGUUUGGUAUG--| CU GC A GUUGGAC
GCU GGGGCUCAACU UCUCCCAAUU AGUCA U
UGG UCCUGAGUUGG AGAGGGUUAA UCAGU U
CAGGUCAACUGUUUGUCCAG^ UC GA A UUUAGUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cpi-Mir-1677-o8_5p* |
| mirBase accession | MIMAT0037932 |
|---|
| Sequence |
0- AACUGCUCUCCCAAUUAAGUCA -22
Get sequence
|
|---|
| Mature sequence |
Cpi-Mir-1677-o8_3p |
| mirBase accession | MIMAT0037933 |
|---|
| Sequence |
40- ACUAAAUUGGGAGAAGGGUUGA -62
Get sequence
|
|---|
