| MirGeneDB ID | Cpo-Mir-1379 |
|---|
| Family name |
MIR-1379 (all species) |
|---|
| Seed |
ACGGGCU |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-1379
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_13: 2582941-2582997 [+]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
GACGAGGGGACCUUCAGGGAGCCCACGGGCUCAGGCUCUCAGCCCGAGCCGUGUUCUUCAGACGGGCACGGGCUGCAGCGCCAACGCCCGUGGGCCCCCAGGGCCAGGCCAACGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GACGAGGGGACCUUCAG-- A UCA U -| A GUGUUC
GG GCCCACGGGC GGC CU CAGCCCG GCC U
CC CGGGUGCCCG CCG GA GUCGGGC CGG U
CUCGCAACCGGACCGGGAC C CAA C C^ A GCAGAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cpo-Mir-1379_5p* |
| mirBase accession | MIMAT0047423 |
|---|
| Sequence |
0- UCAGGCUCUCAGCCCGAGCC -20
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-1379_3p |
| mirBase accession | MIMAT0047424 |
|---|
| Sequence |
36- CACGGGCUGCAGCGCCAACGC -57
Get sequence
|
|---|
