MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-1379

Family name MIR-1379 (all species)
Seed ACGGGCU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-1379
Paralogues
Orthologues Eca-Mir-1379 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_13: 2582941-2582997 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GACGAGGGGACCUUCAGGGAGCCCACGGGCUCAGGCUCUCAGCCCGAGCCGUGUUCUUCAGACGGGCACGGGCUGCAGCGCCAACGCCCGUGGGCCCCCAGGGCCAGGCCAACGCUC
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Structure
        10          20        30         40        50       
GACGAGGGGACCUUCAG--  A          UCA   U  -|      A   GUGUUC 
                   GG GCCCACGGGC   GGC CU CAGCCCG GCC      U
                   CC CGGGUGCCCG   CCG GA GUCGGGC CGG      U
CUCGCAACCGGACCGGGAC  C          CAA   C  C^      A   GCAGAC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-1379_5p*

mirBase accessionMIMAT0047423
Sequence
0- UCAGGCUCUCAGCCCGAGCC -20
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Mature sequence

Cpo-Mir-1379_3p

mirBase accessionMIMAT0047424
Sequence
36- CACGGGCUGCAGCGCCAACGC -57
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