| MirGeneDB ID | Csc-Novel-5-P1a |
|---|
| Family name |
CSC-NOVEL-5 (all species) |
|---|
| Seed |
UCGUCUA |
|---|
| Species |
Arizona bark scorpion (Centruroides sculpturatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Csc-Novel-5-P1b
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. sculpturatus
|
|---|
| Node of Origin (family) |
C. sculpturatus
|
|---|
Genome context
(GCF_000671375.1_CSC) |
NW_019384667.1: 172176-172245 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAGGUGAAUGCAUAACUAAGGUAUGAGAAUGGGUAAACACAAUAGAUGGAUGGAGACAAAAUAGCAUCUCCCCCUACAUUCGUCUACUGUGUUCACCUGUUUUCUUGCUUUGAGACGACACGUUUCUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGGUGAAUGCAUAACU--| U A A GAGACAAAAUA
AAGGUA GAGAAUGGGU AACACA UAGAUGGAUG G
UUUCGU CUUUUGUCCA UUGUGU AUCUGCUUAC C
ACUUCUUUGCACAGCAGAG^ U C C AUCCCCCUCUA
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Csc-Novel-5-P1a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGUAAACACAAUAGAUGGAUG -22
Get sequence
|
|---|
| Mature sequence |
Csc-Novel-5-P1a_3p |
| mirBase accession | None |
|---|
| Sequence |
48- UUCGUCUACUGUGUUCACCUGU -70
Get sequence
|
|---|
