| MirGeneDB ID | Csc-Novel-6-v1 |
|---|
| Family name |
CSC-NOVEL-6 (all species) |
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| Seed |
UGAGUGU |
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| Species |
Arizona bark scorpion (Centruroides sculpturatus) |
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| MiRBase ID |
|
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| Paralogues |
Csc-Novel-6-v2
|
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| Orthologues |
|
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| Node of Origin (locus) |
C. sculpturatus
|
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| Node of Origin (family) |
C. sculpturatus
|
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Genome context
(GCF_000671375.1_CSC) |
NW_019384719.1: 292442-292502 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUACUAAAAAUUUUUGUGUUAUGGAAUUGGCUGAGUGUAGAGUCAACUGAUGCCUAUGGAAAUACGGCAUCAGUUGACUGUACACUCAGCCAGUUCCAUAAUAUUAUCCUUCAAUGUUCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUACUAAAAAUUUUUGU--| G CCUAUGG
GUUAUGGAAUUGGCUGAGUGUA AGUCAACUGAUG \
UAAUACCUUGACCGACUCACAU UCAGUUGACUAC A
CUCUUGUAACUUCCUAUUA^ G GGCAUAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Csc-Novel-6-v1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUGAGUGUAGAGUCAACUGAUG -22
Get sequence
|
|---|
| Star sequence |
Csc-Novel-6-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UCAGUUGACUGUACACUCAGCC -61
Get sequence
|
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