| MirGeneDB ID | Cte-Mir-2700 |
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| Family name |
MIR-2700 (all species) |
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| Seed |
UUUGCAA |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2700
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. teleta
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| Node of Origin (family) |
C. teleta
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_413: 101606-101668 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCUCUCAUGCAGUCUAUGCAGGGGUUCUGAUUUUGCAAAUUUCAGAUUCAUUGUCAAACUGCGACUCCCAAUGAAUCUUAAUUUUGCAGAUUUAGGACCCGUGGCUGUUCAUCGCAUGCCGGG
Get precursor sequence
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| Structure | 10 20 30 40 50 60
CCUCUCAUGCAGUCUAUG--| G U U C GUCAAACU
CA GGGUUCUGA UUUGCAAA UU AGAUUCAUU \
GU CCCAGGAUU AGACGUUU AA UCUAAGUAA G
GGGCCGUACGCUACUUGUCG^ G U U U CCCUCAGC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Cte-Mir-2700_5p |
| mirBase accession | MIMAT0013563 |
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| Sequence |
0- UUUUGCAAAUUUCAGAUUCAUU -22
Get sequence
|
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| Star sequence |
Cte-Mir-2700_3p* |
| mirBase accession | None |
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| Sequence |
41- UGAAUCUUAAUUUUGCAGAUUU -63
Get sequence
|
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