| MirGeneDB ID | Cte-Mir-2701 |
|---|
| Family name |
MIR-2701 (all species) |
|---|
| Seed |
CCGCAUU |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
cte-mir-2701
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. teleta
|
|---|
| Node of Origin (family) |
C. teleta
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_1278: 13412-13470 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACCUUGGGUUCUCUGAAUGACCUUGCAUUGCCCGCAUUGCCAUCGGCGCCUGGUCUGAUUUCACACAGGUGUCAAUGUCAAAGCGUACAAUGUGACGUCAAUUCGCUUCAUUUAUAUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCUUGGGUUCUCUGAA--| C UG CC A C C GUCUGA
UGAC U CAUUG CGC UUG CAU GGCGCCUG \
ACUG A GUAAC GCG AAC GUA CUGUGGAC U
AGUAUAUUUACUUCGCUUA^ C GU AU A U A ACACUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cte-Mir-2701_5p |
| mirBase accession | MIMAT0013564 |
|---|
| Sequence |
0- CCCGCAUUGCCAUCGGCGCCUG -22
Get sequence
|
|---|
| Star sequence |
Cte-Mir-2701_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GGUGUCAAUGUCAAAGCGUACA -59
Get sequence
|
|---|
