| MirGeneDB ID | Cte-Novel-1 |
|---|
| Family name |
CTE-NOVEL-1 (all species) |
|---|
| Seed |
UUCAGAA |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. teleta
|
|---|
| Node of Origin (family) |
C. teleta
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_149: 353474-353536 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCAUCCAUCUGCGACUGUUCUGUGUGGAUUAUUCAGAAUUCAUGUGCGCGGUUCUGUUCCUAUUUAUUCUGAAUCCGUCUAGGAUUCUGGAGCUCCAUACUUGAUACCCCACGAGGCUCCAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCAUCCAUCUGCGACUGU- U-| UUA A U C UGUUCCU
UC GUGUGGA UUCAGAAUUC UG GCG GGUUC A
AG CAUACCU AGGUCUUAGG AU UGC CUAAG U
AGACCUCGGAGCACCCCAU UU^ CG- - C - UCUUAUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cte-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUUCAGAAUUCAUGUGCGCGGUUC -24
Get sequence
|
|---|
| Co-mature sequence |
Cte-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
42- AUCCGUCUAGGAUUCUGGAGC -63
Get sequence
|
|---|
