| MirGeneDB ID | Cte-Novel-2 |
|---|
| Family name |
CTE-NOVEL-2 (all species) |
|---|
| Seed |
UACCAUA |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
C. teleta
|
|---|
| Node of Origin (family) |
C. teleta
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_62: 217428-217487 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAUAUACCGCAUAUGAUAUUGAUAGGCCUACCUGGGAUCCUGUAUAGUAAACCAUAAUAUAGUAAUGUUUACCAUAUAGGAUCUUAGAUAGGCCUACAUUGACAAAUUUCCCGCGUUUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUAUACCGCAUAUGAUAU---| A C A CAUAAU
UG UAGGCCUA CUGGGAUCCUGUAU GUAAAC A
AC AUCCGGAU GAUUCUAGGAUAUA CAUUUG U
AGUUUGCGCCCUUUAAACAGUU^ - A C UAAUGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Cte-Novel-2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCUGGGAUCCUGUAUAGUAAAC -22
Get sequence
|
|---|
| Mature sequence |
Cte-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUACCAUAUAGGAUCUUAGAUA -60
Get sequence
|
|---|
