| MirGeneDB ID | Cte-Novel-3-P1 |
|---|
| Family name |
CTE-NOVEL-3 (all species) |
|---|
| Seed |
AUAUGAG |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
|
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| Paralogues |
Cte-Novel-3-P2
|
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| Orthologues |
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| Node of Origin (locus) |
C. teleta
|
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| Node of Origin (family) |
C. teleta
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_298: 127540-127600 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCCACCGUUGUUGUUCUCGCGUGGAAAUGGACUGUAUCUUCACUCGAAUUUCAAAAAAACAAGAAAAGAAAUAUGAGUGAAGAUGCAGUCCAUUUCCAUUGUUUAUACGUCAGUCACCGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCACCGUUGUUGUUCUC- -| A AAAAAAA
GC GUGGAAAUGGACUGUAUCUUCACUCG AUUUC \
UG UACCUUUACCUGACGUAGAAGUGAGU UAAAG C
ACGCCACUGACUGCAUAUU U^ A AAAAGAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cte-Novel-3-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUGUAUCUUCACUCGAAUUUC -22
Get sequence
|
|---|
| Mature sequence |
Cte-Novel-3-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- AAUAUGAGUGAAGAUGCAGUCC -61
Get sequence
|
|---|
