MirGeneDB ID | Cte-Novel-4 |
---|---|
Family name | CTE-NOVEL-4 (all species) |
Seed | CUACCUG |
Species | Polychaete worm (Capitella teleta) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | C. teleta |
Node of Origin (family) | C. teleta |
Genome context (Capitella_teleta_v1.0) |
CAPTEscaffold_35: 182586-182644 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | GUAGAUGAGGCAGGGAUAUGAUUUAAGGAUGUAGAUUUUCUCAGGUAGACCGUGUAGACGGUAGACGGUCUACCUGAGAAUAUCCACAUUAUAAUCAUUAUGGAGCGUAUAUCAAACAGGet precursor sequence |
Structure | 10 20 30 40 50 GUAGAUGAGGCAGGGAU----| UAAG A U GUGUAGA AUGAUU GAUGU GAU UUCUCAGGUAGACC \ UACUAA UUACA CUA AAGAGUCCAUCUGG C GACAAACUAUAUGCGAGGUAU^ UA-- C U CAGAUGG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UGUG in loop |
Star sequence | Cte-Novel-4_5p* |
mirBase accession | None |
Sequence |
0- GUAGAUUUUCUCAGGUAGACC -21
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|
Mature sequence | Cte-Novel-4_3p |
mirBase accession | None |
Sequence |
38- UCUACCUGAGAAUAUCCACAU -59
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|