| MirGeneDB ID | Cte-Novel-5 |
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| Family name |
CTE-NOVEL-5 (all species) |
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| Seed |
CUACCUG |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. teleta
|
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| Node of Origin (family) |
C. teleta
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_35: 182586-182644 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUAGAUGAGGCAGGGAUAUGAUUUAAGGAUGUAGAUUUUCUCAGGUAGACCGUGUAGACGGUAGACGGUCUACCUGAGAAUAUCCACAUUAUAAUCAUUAUGGAGCGUAUAUCAAACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUAGAUGAGGCAGGGAU----| UAAG A U GUGUAGA
AUGAUU GAUGU GAU UUCUCAGGUAGACC \
UACUAA UUACA CUA AAGAGUCCAUCUGG C
GACAAACUAUAUGCGAGGUAU^ UA-- C U CAGAUGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Cte-Novel-5_5p* |
| mirBase accession | None |
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| Sequence |
0- GUAGAUUUUCUCAGGUAGACC -21
Get sequence
|
|---|
| Mature sequence |
Cte-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCUACCUGAGAAUAUCCACAU -59
Get sequence
|
|---|
