MirGeneDB ID | Dan-Mir-962 |
Family name |
MIR-962 (all species) |
Seed |
UAAGGUA |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dme-Mir-962
Dmo-Mir-962
Dsi-Mir-962
Dya-Mir-962
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Dana_caf1) |
scaffold_12916: 11085121-11085180 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCAACCACCUGGCCGAGGGCACUCAAGCUAUAAGGUAGAGAAAAUAAUGUCUUCGUCUCCAAAUAGACAUCAAUUUCCCUAGCUUGCAUUUUGCCUGCCCCCAAGCAACAAUGAUAACA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCAACCACCUGGCCGA--| CU CUA G A AUA UCGUC
GGGCA CAAG UAAG UAG GAAA AUGUCU U
CCCGU GUUU GUUC AUC CUUU UACAGA C
ACAAUAGUAACAACGAACC^ CC UAC G C AAC UAAAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dan-Mir-962_5p |
mirBase accession | None |
Sequence |
0- AUAAGGUAGAGAAAAUAAUGUCU -23
Get sequence
|
Star sequence |
Dan-Mir-962_3p* |
mirBase accession | None |
Sequence |
38- CAUCAAUUUCCCUAGCUUGCAU -60
Get sequence
|