MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-962

Family name MIR-962 (all species)
Seed UAAGGUA
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-962
Paralogues
Orthologues Dan-Mir-962  Dme-Mir-962  Dmo-Mir-962  Dya-Mir-962 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2L: 5445969-5446028 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-962)		 Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUACAACUACCUCGAUGGGGCGCUCAGGCUAUAAGGUAGAGAAAUUGAUGUUGUCUACACUAUUCAGACUUCAGUUUCAUUGCCUUUCAAUUUGUUUGCCCCCCUGCAACAGUGAUAGUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
CUACAACUACCUCGAUG--|    CU    CUAU       A        UGUU    ACAC 
                   GGGCG  CAGG    AAGGUAG GAAAUUGA    GUCU    \
                   CCCGU  GUUU    UUCCGUU CUUUGACU    CAGA    U
GUGAUAGUGACAACGUCCC^    UU    AACU       A        U---    CUUA 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-962_5p
mirBase accessionMIMAT0012496
Sequence 
0- AUAAGGUAGAGAAAUUGAUGUUGUCU -26
Get sequence
Star sequence

Dsi-Mir-962_3p*
mirBase accessionNone
Sequence 
37- ACUUCAGUUUCAUUGCCUUUCAA -60
Get sequence