MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-959-v2

Family name MIR-959 (all species)
Seed UAGUACU
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-959
Paralogues Dsi-Mir-959-v1 
Orthologues Dan-Mir-959-v2  Dme-Mir-959-v2  Dya-Mir-959-v2 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2L: 5445612-5445673 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-959-v2)		 Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUAAAUAGAUUUUAACUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUUCUUUGCGGAGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGUUUAAAGAAGCUGCAAGGAUCAU
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Structure
        10         20         30        40        50        60
UUAAAUAGAUUUUAACU-   UU     -|  U        GGGU        ACCUUUUC 
                  UUG  CUAUA UUC UAGUACUC    UGAUAAAG        U
                  AAU  GAUAU AAG AUUAUGGG    ACUGUUUC        U
UACUAGGAACGUCGAAGA   UU     A^  U        GGCU        CGAGGCGU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-959-v2_5p
mirBase accessionNone
Sequence 
0- UUAGUACUCGGGUUGAUAAAGA -22
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Star sequence

Dsi-Mir-959-v2_3p*
mirBase accessionMIMAT0012508
Sequence 
40- UUUGUCAUCGGGGGUAUUAUGA -62
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