MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-960

Family name MIR-960 (all species)
Seed GAGUAUU
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-960
Paralogues
Orthologues Dan-Mir-960  Dme-Mir-960  Dmo-Mir-960  Dya-Mir-960 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2L: 5445734-5445793 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-960)		 Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCACGCCCACGGGUUUUGUACCACAUUCAGAGUAUUCCAGGUUGCAUAGCUUUGUGCUACUAUUGCUGUACGAUCUGGGACACUUUUAACAUGGUAUCAAAUCUGAUUCCCCCAAACG
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Structure
        10         20         30        40        50         
CGUCACGCCCACGGGUU-   -|    CA  C     A          C     UUUGUG 
                  UUG UACCA  UU AGAGU UUCCAGGUUG AUAGC      C
                  AAC AUGGU  AA UUUCA AGGGUCUAGC UGUCG      U
GCAAACCCCCUUAGUCUA   U^    AC  U     C          A     UUAUCA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -2 on the 3p arm, and -1 on the 5p arm,.
3' NTU No
MotifsNo
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-960_5p
mirBase accessionMIMAT0012495
Sequence 
0- AGAGUAUUCCAGGUUGCAUAGC -22
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Star sequence

Dsi-Mir-960_3p*
mirBase accessionNone
Sequence 
38- UGUACGAUCUGGGACACUUUUA -60
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