| MirGeneDB ID | Dmo-Mir-960 |
|---|
| Family name |
MIR-960 (all species) |
|---|
| Seed |
AUACAGU |
|---|
| Species |
Fruit fly (Drosophila mojavensis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dan-Mir-960
Dme-Mir-960
Dsi-Mir-960
Dya-Mir-960
|
|---|
| Node of Origin (locus) |
Drosophila
|
|---|
| Node of Origin (family) |
Drosophila
|
|---|
Genome context
(Dmoj_caf1) |
scaffold_6500: 14018218-14018275 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAAGAUUGAAAAUUGACUAAGUCAUGCUUUGAGUAUUCCUUAUUGCAUAGUUUACAUAUAAUUACUAUACAGUCUGGAGCACUUAAAGUUGGGCAUAGACAACCGAACAACUUAGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAAGAUUGAAAAUUGA--| A AU A UU C UUACA
CUA GUC GCUUUGAGU UUCC AUUG AUAGU U
GAU CGG UGAAAUUCA GAGG UGAC UAUCA A
AGGAUUCAACAAGCCAACA^ A GU C UC A UUAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Dmo-Mir-960_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGUAUUCCUUAUUGCAUAGU -22
Get sequence
|
|---|
| Mature sequence |
Dmo-Mir-960_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUACAGUCUGGAGCACUUAAA -58
Get sequence
|
|---|
