MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-960

Family name MIR-960 (all species)
Seed GAGUAUU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-960
Paralogues
Orthologues Dan-Mir-960  Dmo-Mir-960  Dsi-Mir-960  Dya-Mir-960 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_melanogaster_BDGP6)		 2L: 5641081-5641140 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-960)		 Mir-959-v1 2L: 5640958-5641021 [+] UCSC Ensembl
Mir-959-v2 2L: 5640959-5641020 [+] UCSC Ensembl
Mir-960 2L: 5641081-5641140 [+] UCSC Ensembl
Mir-961 2L: 5641208-5641266 [+] UCSC Ensembl
Mir-962 2L: 5641315-5641374 [+] UCSC Ensembl
Mir-963-v2 2L: 5642004-5642065 [+] UCSC Ensembl
Mir-963-v1 2L: 5642005-5642064 [+] UCSC Ensembl
Mir-964-v1 2L: 5642127-5642187 [+] UCSC Ensembl
Mir-964-v2 2L: 5642128-5642186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUACCGCCCACGGGUUUUGUACCACAUUCUGAGUAUUCCAGAUUGCAUAGCUUUGUGCUACUAUUGCUAUACGGUCUGGGACACUUUUAACAUGGUAUCAAAUCAGAUUCACCUAAUAG
Get precursor sequence
Structure
        10         20         30        40        50         
CGUACCGCCCACGGGUU-   -|    CA  CU    A          C     UUUGUG 
                  UUG UACCA  UU  GAGU UUCCAGAUUG AUAGC      C
                  AAC AUGGU  AA  UUCA AGGGUCUGGC UAUCG      U
GAUAAUCCACUUAGACUA   U^    AC  UU    C          A     UUAUCA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -2 on the 3p arm, and -1 on the 5p arm,.
3' NTU No
MotifsNo
Tissue expression
-   +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-960_5p
mirBase accessionMIMAT0005474
Sequence 
0- UGAGUAUUCCAGAUUGCAUAGC -22
Get sequence
Proposed targets microrna.org: MIMAT0005474
TargetScanFly: dme-miR-960
Star sequence

Dme-Mir-960_3p*
mirBase accessionMIMAT0020855
Sequence 
38- UAUACGGUCUGGGACACUUUUA -60
Get sequence