MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-963-v2

Family name MIR-963 (all species)
Seed ACAAGGU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-963
Paralogues Dme-Mir-963-v1 
Orthologues Dan-Mir-963  Dmo-Mir-963-v2  Dsi-Mir-963  Dya-Mir-963 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_melanogaster_BDGP6)
2L: 5642004-5642065 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-963-v2)
Mir-959-v1 2L: 5640958-5641021 [+] UCSC Ensembl
Mir-959-v2 2L: 5640959-5641020 [+] UCSC Ensembl
Mir-960 2L: 5641081-5641140 [+] UCSC Ensembl
Mir-961 2L: 5641208-5641266 [+] UCSC Ensembl
Mir-962 2L: 5641315-5641374 [+] UCSC Ensembl
Mir-963-v2 2L: 5642004-5642065 [+] UCSC Ensembl
Mir-963-v1 2L: 5642005-5642064 [+] UCSC Ensembl
Mir-964-v1 2L: 5642127-5642187 [+] UCSC Ensembl
Mir-964-v2 2L: 5642128-5642186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUACAACUAAUUUUUCUUAGUCUAAUCUAAAACAAGGUAAAUAUCAGGUUGUUUCCUGUAUUCGAUCGAAACAUCUGUAUAUACCUUUGUUCCGAUUGGACAAAAGUGCGUCUUCUAGUUGG
Get precursor sequence
Structure
        10          20        30         40        50        60 
UUACAACUAAUUUUUCUUA--|       UAA     -    A   U     U    CCUGUA 
                     GUCUAAUC   AACAA GGUA AUA CAGGU GUUU      U
                     CAGGUUAG   UUGUU CCAU UAU GUCUA CAAA      U
GGUUGAUCUUCUGCGUGAAAA^       CC-     U    A   -     -    GCUAGC 
120       110       100         90        80          70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-963-v2_5p

mirBase accessionMIMAT0005477
Sequence
0- AACAAGGUAAAUAUCAGGUUGUUU -24
Get sequence
Proposed targets microrna.org: MIMAT0005477
TargetScanFly: dme-miR-963
Star sequence

Dme-Mir-963-v2_3p*

mirBase accessionMIMAT0020858
Sequence
40- ACAUCUGUAUAUACCUUUGUUC -62
Get sequence