MirGeneDB ID | Dan-Mir-963 |
Family name |
MIR-963 (all species) |
Seed |
CAAGGUA |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dme-Mir-963-v1
Dme-Mir-963-v2
Dmo-Mir-963-v1
Dmo-Mir-963-v2
Dsi-Mir-963
Dya-Mir-963
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Dana_caf1) |
scaffold_12916: 11085461-11085523 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUAAAAAGUGUUCUUGAUUUAAUCUAAAACAAGGUACAUAUCUGGUUGUUUCCUAUAUUCAAAGUUUGAAACAUCUGUAUCUACCUUUGUUUCGAUUAAACUAAAGAGCUACUAAGAAUAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUUAAAAAGUGUUCUUGA--| UA - C CU U CUAUAUU
UUUAAUC AAACAA GGUA AUAU GG UGUUUC \
AAAUUAG UUUGUU CCAU UAUG UC ACAAAG C
CAUAAGAAUCAUCGAGAAAUC^ C- U C -- U UUUGAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dan-Mir-963_5p |
mirBase accession | None |
Sequence |
0- ACAAGGUACAUAUCUGGUUGUUUC -24
Get sequence
|
Star sequence |
Dan-Mir-963_3p* |
mirBase accession | None |
Sequence |
41- AACAUCUGUAUCUACCUUUGUU -63
Get sequence
|