MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-963

Family name MIR-963 (all species)
Seed CAAGGUA
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-963
Paralogues
Orthologues Dan-Mir-963  Dme-Mir-963-v1  Dme-Mir-963-v2  Dmo-Mir-963-v1  Dmo-Mir-963-v2  Dya-Mir-963 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2L: 5446636-5446695 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-963)		 Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUACUACUGAUUUUCUUAGUCUAAUCUAAAACAAGGUAAAUAUCAGGUUGUUUCCUGUAUUAGAUCGAAACAUCUGUAUAUACCUUUGAUCCGGUUGGACAAAAGUGCAUCUUCUAGUGG
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Structure
        10          20        30        40        50        60
UUACUACUGAUUUUCUUA--|       UAAAAC      A   U     U     CUGUA 
                    GUCUAAUC      AAGGUA AUA CAGGU GUUUC     U
                    CAGGUUGG      UUCCAU UAU GUCUA CAAAG     U
GGUGAUCUUCUACGUGAAAA^       CCUAGU      A   -     -     CUAGA 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-963_5p
mirBase accessionMIMAT0012473
Sequence 
0- ACAAGGUAAAUAUCAGGUUGUUUC -24
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Star sequence

Dsi-Mir-963_3p*
mirBase accessionMIMAT0012474
Sequence 
38- AACAUCUGUAUAUACCUUUGAU -60
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