MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-961

Family name MIR-961 (all species)
Seed UUGAUCA
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-961
Paralogues
Orthologues Dan-Mir-961  Dme-Mir-961  Dya-Mir-961 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2L: 5445861-5445919 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-961)		 Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGUGCUCGUUAUCAUGGGCCGAGUUACCUUUGAUCAUCAGUAAGUGAGAUUGUUUCUGAUACGAUUUCGUUUUCUGGCAAUCAAAGGAACUCGACUCGACUUGAAUCUACAACUACC
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Structure
        10           20        30        40        50         
AAUGUGCUCGUUAUCAU---|  C      A        CA    U         UGUUUC 
                    GGG CGAGUU CCUUUGAU  UCAG AAGUGAGAU      \
                    CUC GCUCAA GGAAACUA  GGUC UUUGCUUUA      U
CCAUCAACAUCUAAGUUCAG^  A      -        AC    U         GCAUAG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-961_5p
mirBase accessionMIMAT0012469
Sequence 
0- UUUGAUCAUCAGUAAGUGAGAU -22
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Star sequence

Dsi-Mir-961_3p*
mirBase accessionMIMAT0012470
Sequence 
37- UUCGUUUUCUGGCAAUCAAAGG -59
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