Mir-964-v1

MirGeneDB ID

Dsi-Mir-964-v1

Family name

MIR-964 (all species)

Seed

UAGAAUA

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-964

Paralogues

Dsi-Mir-964-v2

Orthologues

Dan-Mir-964 Dme-Mir-964-v1 Dmo-Mir-964 Dya-Mir-964-v1

Node of Origin (locus)

Drosophila

Node of Origin (family)

Drosophila

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2L: 5446777-5446837 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-964-v1)

Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGUCAAUCAAAAUCUUGGUCCAACUUGCCUUAGAAUAGGGGAGCUUAACUUGUGUUUUUAAUGUUUAAGUUAAAAGCCACUGUUCUAAGACAAUUUGAUGAUCAAAACUUCAACUUCAUU

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Structure

        10        20          30        40        50          
AAGUCAAUCAAAAUCUUGGUC--|  C   C          G  AGC       GUGUUUU 
                       CAA UUG CUUAGAAUAG GG   UUAACUU       \
                       GUU AAC GAAUCUUGUC CC   AAUUGAA       U
UUACUUCAACUUCAAAACUAGUA^  U   A          A  GAA       UUUGUAA 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

He	Wh

Mature sequence

Dsi-Mir-964-v1_5p

mirBase accession

MIMAT0012475

Sequence

0- UUAGAAUAGGGGAGCUUAACUU -22

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Star sequence

Dsi-Mir-964-v1_3p*

mirBase accession

MIMAT0012476

Sequence

39- GUUAAAAGCCACUGUUCUAAGA -61

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