MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-964-v2

Family name MIR-964 (all species)
Seed AGAAUAG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-964
Paralogues Dsi-Mir-964-v1 
Orthologues Dan-Mir-964  Dme-Mir-964-v2  Dmo-Mir-964  Dya-Mir-964-v2 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2L: 5446778-5446836 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-964-v2)		 Mir-959-v1 2L: 5445611-5445674 [+] UCSC Ensembl
Mir-959-v2 2L: 5445612-5445673 [+] UCSC Ensembl
Mir-960 2L: 5445734-5445793 [+] UCSC Ensembl
Mir-961 2L: 5445861-5445919 [+] UCSC Ensembl
Mir-962 2L: 5445969-5446028 [+] UCSC Ensembl
Mir-963 2L: 5446636-5446695 [+] UCSC Ensembl
Mir-964-v1 2L: 5446777-5446837 [+] UCSC Ensembl
Mir-964-v2 2L: 5446778-5446836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCAAUCAAAAUCUUGGUCCAACUUGCCUUAGAAUAGGGGAGCUUAACUUGUGUUUUUAAUGUUUAAGUUAAAAGCCACUGUUCUAAGACAAUUUGAUGAUCAAAACUUCAACUUCAU
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Structure
        10        20          30        40        50         
AGUCAAUCAAAAUCUUGGUC--|  C   C          G  AGC        UGUUUU 
                      CAA UUG CUUAGAAUAG GG   UUAACUUG      \
                      GUU AAC GAAUCUUGUC CC   AAUUGAAU      U
UACUUCAACUUCAAAACUAGUA^  U   A          A  GAA        UUGUAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-964-v2_5p
mirBase accessionMIMAT0012475
Sequence 
0- UAGAAUAGGGGAGCUUAACUUG -22
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Star sequence

Dsi-Mir-964-v2_3p*
mirBase accessionMIMAT0012476
Sequence 
37- AGUUAAAAGCCACUGUUCUAAG -59
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