MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-961

Family name MIR-961 (all species)
Seed UUGAUCA
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues
Orthologues Dme-Mir-961  Dsi-Mir-961  Dya-Mir-961 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Dana_caf1)
scaffold_12916: 11085018-11085076 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UACAGGAAAGCGACUUAAGUCCGAGCACUAUUUGAUCACUGGUUACUGAGGUUGUUUUGUCAUAAGCUUCGUUUUCUGGCGAUCAAAUACGCUCGACUUUGGGCCCAACCACCUGGCCG
Get precursor sequence
Structure
        10            20        30        40         50         
UACAGGAAAGCGACUUA----|   C    AC         A UG UU-  U     UGUUUU 
                     AGUC GAGC  UAUUUGAUC C  G   AC GAGGU      \
                     UCAG CUCG  AUAAACUAG G  C   UG CUUCG      G
GCCGGUCCACCAACCCGGGUU^   -    C-         C GU UUU  -     AAUACU 
       110       100         90         80         70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe
Mature sequence

Dan-Mir-961_5p

mirBase accessionNone
Sequence
0- UUUGAUCACUGGUUACUGAGGU -22
Get sequence
Star sequence

Dan-Mir-961_3p* (predicted)

mirBase accessionNone
Sequence
37- UUCGUUUUCUGGCGAUCAAAUA -59
Get sequence