Mir-961

MirGeneDB ID

Dme-Mir-961

Family name

MIR-961 (all species)

Seed

UUGAUCA

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-961

Paralogues

Orthologues

Dan-Mir-961 Dsi-Mir-961 Dya-Mir-961

Node of Origin (locus)

D. melanogaster group

Node of Origin (family)

D. melanogaster group

Genome context
(Drosophila_melanogaster_BDGP6)

2L: 5641208-5641266 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-961)

Mir-959-v1 2L: 5640958-5641021 [+] UCSC Ensembl
Mir-959-v2 2L: 5640959-5641020 [+] UCSC Ensembl
Mir-960 2L: 5641081-5641140 [+] UCSC Ensembl
Mir-961 2L: 5641208-5641266 [+] UCSC Ensembl
Mir-962 2L: 5641315-5641374 [+] UCSC Ensembl
Mir-963-v2 2L: 5642004-5642065 [+] UCSC Ensembl
Mir-963-v1 2L: 5642005-5642064 [+] UCSC Ensembl
Mir-964-v1 2L: 5642127-5642187 [+] UCSC Ensembl
Mir-964-v2 2L: 5642128-5642186 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUGAGCUCGUUAUCAAGGGCCGAGUUACCUUUGAUCACCAGUAACUGAGAUUGUUUCUGAUACGGUUUCGUUUUCUGGCAAUCAAAAGAACUUGGACUCGACUUGAAUUCAACUACUU

Get precursor sequence

Structure

        10          20         30        40         50         
AGUGAGCUCGUUAUCAA--   -|      ACC      CA    U-   U     UGUUUC 
                   GGG CCGAGUU   UUUGAU  CCAG  AAC GAGAU      \
                   CUC GGUUCAA   AAACUA  GGUC  UUG CUUUG      U
UUCAUCAACUUAAGUUCAG   A^      GA-      AC    UU   -     GCAUAG 
       110       100        90         80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-961_5p

mirBase accession

MIMAT0005475

Sequence

0- UUUGAUCACCAGUAACUGAGAU -22

Get sequence

Proposed targets

microrna.org: MIMAT0005475
TargetScanFly: dme-miR-961

Star sequence

Dme-Mir-961_3p*

mirBase accession

MIMAT0020856

Sequence

37- UUCGUUUUCUGGCAAUCAAAAG -59

Get sequence