MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-959-v1

Family name MIR-959 (all species)
Seed UGUCAUC
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-959
Paralogues Dme-Mir-959-v2 
Orthologues Dan-Mir-959-v1  Dsi-Mir-959-v1  Dya-Mir-959-v1 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Drosophila_melanogaster_BDGP6)		 2L: 5640958-5641021 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-959-v1)		 Mir-959-v1 2L: 5640958-5641021 [+] UCSC Ensembl
Mir-959-v2 2L: 5640959-5641020 [+] UCSC Ensembl
Mir-960 2L: 5641081-5641140 [+] UCSC Ensembl
Mir-961 2L: 5641208-5641266 [+] UCSC Ensembl
Mir-962 2L: 5641315-5641374 [+] UCSC Ensembl
Mir-963-v2 2L: 5642004-5642065 [+] UCSC Ensembl
Mir-963-v1 2L: 5642005-5642064 [+] UCSC Ensembl
Mir-964-v1 2L: 5642127-5642187 [+] UCSC Ensembl
Mir-964-v2 2L: 5642128-5642186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUAAAUUGAUUUUAACUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUUCUUCAGGGAGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGUUUAAAGAAACUGCAAUGAUUAUC
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Structure
        10         20         30        40        50        60 
AUUAAAUUGAUUUUAAC-    UU     -|  U        GGGU        ACCUUUUC 
                  UUUG  CUAUA UUC UAGUACUC    UGAUAAAG        U
                  AAAU  GAUAU AAG AUUAUGGG    ACUGUUUC        U
CUAUUAGUAACGUCAAAG    UU     A^  U        GGCU        CGAGGGAC 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-959-v1_5p*
mirBase accessionMIMAT0020854
Sequence 
0- CUUAGUACUCGGGUUGAUAAAG -22
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Mature sequence

Dme-Mir-959-v1_3p
mirBase accessionMIMAT0005473
Sequence 
42- UUGUCAUCGGGGGUAUUAUGAA -64
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Proposed targets microrna.org: MIMAT0005473
TargetScanFly: dme-miR-959