MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-959-v1

Family name MIR-959 (all species)
Seed UGUCAUC
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues Dan-Mir-959-v2 
Orthologues Dme-Mir-959-v1  Dsi-Mir-959-v1  Dya-Mir-959-v1 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Dana_caf1)
scaffold_12916: 11084735-11084797 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUAAAUUUAUUUCAAUUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUCCUGGAGCCGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGCUCAAAAAACCAGCACAAUGUAUC
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Structure
        10         20         30        40        50        60 
GUUAAAUUUAUUUCAAU-    UU     -|  U        GGGU        ACCUUUCC 
                  UUUG  CUAUA UUC UAGUACUC    UGAUAAAG        \
                  AAAC  GAUAU AAG AUUAUGGG    ACUGUUUC        U
CUAUGUAACACGACCAAA    UC     A^  U        GGCU        CGCCGAGG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe
Star sequence

Dan-Mir-959-v1_5p*

mirBase accessionNone
Sequence
0- CUUAGUACUCGGGUUGAUAAAG -22
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Mature sequence

Dan-Mir-959-v1_3p

mirBase accessionNone
Sequence
41- UUGUCAUCGGGGGUAUUAUGAA -63
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