MirGeneDB ID | Dan-Mir-959-v1 |
Family name |
MIR-959 (all species) |
Seed |
UGUCAUC |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
Dan-Mir-959-v2
|
Orthologues |
Dme-Mir-959-v1
Dsi-Mir-959-v1
Dya-Mir-959-v1
|
Node of Origin (locus) |
D. melanogaster group
|
Node of Origin (family) |
D. melanogaster group
|
Genome context (Dana_caf1) |
scaffold_12916: 11084735-11084797 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUAAAUUUAUUUCAAUUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUCCUGGAGCCGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGCUCAAAAAACCAGCACAAUGUAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUAAAUUUAUUUCAAU- UU -| U GGGU ACCUUUCC
UUUG CUAUA UUC UAGUACUC UGAUAAAG \
AAAC GAUAU AAG AUUAUGGG ACUGUUUC U
CUAUGUAACACGACCAAA UC A^ U GGCU CGCCGAGG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Mir-959-v1_5p* |
mirBase accession | None |
Sequence |
0- CUUAGUACUCGGGUUGAUAAAG -22
Get sequence
|
Mature sequence |
Dan-Mir-959-v1_3p |
mirBase accession | None |
Sequence |
41- UUGUCAUCGGGGGUAUUAUGAA -63
Get sequence
|