MirGeneDB ID | Dan-Mir-959-v2 |
Family name |
MIR-959 (all species) |
Seed |
UAGUACU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
Dan-Mir-959-v1
|
Orthologues |
Dme-Mir-959-v2
Dsi-Mir-959-v2
Dya-Mir-959-v2
|
Node of Origin (locus) |
D. melanogaster group
|
Node of Origin (family) |
D. melanogaster group
|
Genome context (Dana_caf1) |
scaffold_12916: 11084736-11084796 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUAAAUUUAUUUCAAUUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUCCUGGAGCCGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGCUCAAAAAACCAGCACAAUGUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUAAAUUUAUUUCAAUU- UU -| U GGGU ACCUUUCC
UUG CUAUA UUC UAGUACUC UGAUAAAG \
AAC GAUAU AAG AUUAUGGG ACUGUUUC U
UAUGUAACACGACCAAAA UC A^ U GGCU CGCCGAGG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dan-Mir-959-v2_5p |
mirBase accession | None |
Sequence |
0- UUAGUACUCGGGUUGAUAAAGA -22
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|
Star sequence |
Dan-Mir-959-v2_3p* |
mirBase accession | None |
Sequence |
39- UUUGUCAUCGGGGGUAUUAUGA -61
Get sequence
|