MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-959-v2

Family name MIR-959 (all species)
Seed UAGUACU
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues Dan-Mir-959-v1 
Orthologues Dme-Mir-959-v2  Dsi-Mir-959-v2  Dya-Mir-959-v2 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Dana_caf1)
scaffold_12916: 11084736-11084796 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAAAUUUAUUUCAAUUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUCCUGGAGCCGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGCUCAAAAAACCAGCACAAUGUAU
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Structure
        10         20         30        40        50          
UUAAAUUUAUUUCAAUU-   UU     -|  U        GGGU        ACCUUUCC 
                  UUG  CUAUA UUC UAGUACUC    UGAUAAAG        \
                  AAC  GAUAU AAG AUUAUGGG    ACUGUUUC        U
UAUGUAACACGACCAAAA   UC     A^  U        GGCU        CGCCGAGG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe
Mature sequence

Dan-Mir-959-v2_5p

mirBase accessionNone
Sequence
0- UUAGUACUCGGGUUGAUAAAGA -22
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Star sequence

Dan-Mir-959-v2_3p*

mirBase accessionNone
Sequence
39- UUUGUCAUCGGGGGUAUUAUGA -61
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