MirGeneDB ID | Dya-Mir-959-v1 |
Family name |
MIR-959 (all species) |
Seed |
UGUCAUC |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
Dya-Mir-959-v2
|
Orthologues |
Dan-Mir-959-v1
Dme-Mir-959-v1
Dsi-Mir-959-v1
|
Node of Origin (locus) |
D. melanogaster group
|
Node of Origin (family) |
D. melanogaster group
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
2L: 13552286-13552348 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUAAAUUGAUUUUAACUUUGUUCUAUAUUCUUAGUACUCGGGUUGACAAAGACCUUUCCUUGCGGCGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGCUCAAAGAAACUGCAAGGAUCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUAAAUUGAUUUUAAC- UU -| U GGGU GACCUUUCC
UUUG CUAUA UUC UAGUACUC UGACAAA \
AAAC GAUAU AAG AUUAUGGG ACUGUUU U
CUACUAGGAACGUCAAAG UC A^ U GGCU CCGCGGCGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dya-Mir-959-v1_5p* |
mirBase accession | None |
Sequence |
0- CUUAGUACUCGGGUUGACAAA -21
Get sequence
|
Mature sequence |
Dya-Mir-959-v1_3p |
mirBase accession | None |
Sequence |
41- UUGUCAUCGGGGGUAUUAUGAA -63
Get sequence
|