MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-963-v1

Family name MIR-963 (all species)
Seed CAAGGUA
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-963
Paralogues Dme-Mir-963-v2 
Orthologues Dan-Mir-963  Dmo-Mir-963-v1  Dsi-Mir-963  Dya-Mir-963 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_melanogaster_BDGP6)		 2L: 5642005-5642064 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-963-v1)		 Mir-959-v1 2L: 5640958-5641021 [+] UCSC Ensembl
Mir-959-v2 2L: 5640959-5641020 [+] UCSC Ensembl
Mir-960 2L: 5641081-5641140 [+] UCSC Ensembl
Mir-961 2L: 5641208-5641266 [+] UCSC Ensembl
Mir-962 2L: 5641315-5641374 [+] UCSC Ensembl
Mir-963-v2 2L: 5642004-5642065 [+] UCSC Ensembl
Mir-963-v1 2L: 5642005-5642064 [+] UCSC Ensembl
Mir-964-v1 2L: 5642127-5642187 [+] UCSC Ensembl
Mir-964-v2 2L: 5642128-5642186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAACUAAUUUUUCUUAGUCUAAUCUAAAACAAGGUAAAUAUCAGGUUGUUUCCUGUAUUCGAUCGAAACAUCUGUAUAUACCUUUGUUCCGAUUGGACAAAAGUGCGUCUUCUAGUUG
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Structure
        10          20        30         40        50        60
UACAACUAAUUUUUCUUA--|       UAA     -    A   U     U     CUGUA 
                    GUCUAAUC   AACAA GGUA AUA CAGGU GUUUC     U
                    CAGGUUAG   UUGUU CCAU UAU GUCUA CAAAG     U
GUUGAUCUUCUGCGUGAAAA^       CC-     U    A   -     -     CUAGC 
.       110       100         90        80          70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-963-v1_5p
mirBase accessionMIMAT0005477
Sequence 
0- ACAAGGUAAAUAUCAGGUUGUUUC -24
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Proposed targets microrna.org: MIMAT0005477
TargetScanFly: dme-miR-963
Star sequence

Dme-Mir-963-v1_3p*
mirBase accessionMIMAT0020858
Sequence 
38- AACAUCUGUAUAUACCUUUGUU -60
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