MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-960

Family name MIR-960 (all species)
Seed GAGUAUU
Species Fruit fly (Drosophila ananassae)
MiRBase ID
Paralogues
Orthologues Dme-Mir-960  Dmo-Mir-960  Dsi-Mir-960  Dya-Mir-960 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Dana_caf1)
scaffold_12916: 11084881-11084940 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAAUCAAUAUGAGUUUUGUGCCAGAUUCUGAGUAUUCCUGAUUGCAUAGCUCUGUGUUGUGACUGCUAUACGGUCUGGGACACUUCUAACAUGGCAUCAAAUCUGUGUCAACGGCAGC
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Structure
        10         20         30        40        50         
ACCAAUCAAUAUGAGUU-   -|    GA  CU    A    U     C     UCUGUG 
                  UUG UGCCA  UU  GAGU UUCC GAUUG AUAGC      U
                  AAC ACGGU  AA  UUCA AGGG CUGGC UAUCG      U
CGACGGCAACUGUGUCUA   U^    AC  UC    C    U     A     UCAGUG 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -2 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
Fe
Mature sequence

Dan-Mir-960_5p

mirBase accessionNone
Sequence
0- UGAGUAUUCCUGAUUGCAUAGC -22
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Star sequence

Dan-Mir-960_3p*

mirBase accessionNone
Sequence
38- UAUACGGUCUGGGACACUUCUA -60
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