MirGeneDB ID | Dan-Mir-960 |
Family name |
MIR-960 (all species) |
Seed |
GAGUAUU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dme-Mir-960
Dmo-Mir-960
Dsi-Mir-960
Dya-Mir-960
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Dana_caf1) |
scaffold_12916: 11084881-11084940 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCAAUCAAUAUGAGUUUUGUGCCAGAUUCUGAGUAUUCCUGAUUGCAUAGCUCUGUGUUGUGACUGCUAUACGGUCUGGGACACUUCUAACAUGGCAUCAAAUCUGUGUCAACGGCAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCAAUCAAUAUGAGUU- -| GA CU A U C UCUGUG
UUG UGCCA UU GAGU UUCC GAUUG AUAGC U
AAC ACGGU AA UUCA AGGG CUGGC UAUCG U
CGACGGCAACUGUGUCUA U^ AC UC C U A UCAGUG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -2 on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Dan-Mir-960_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUCCUGAUUGCAUAGC -22
Get sequence
|
Star sequence |
Dan-Mir-960_3p* |
mirBase accession | None |
Sequence |
38- UAUACGGUCUGGGACACUUCUA -60
Get sequence
|