| MirGeneDB ID | Dan-Mir-987 |
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| Family name |
MIR-987 (all species) |
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| Seed |
AAAGUAA |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Dme-Mir-987
Dmo-Mir-987
Dsi-Mir-987
Dya-Mir-987
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| Node of Origin (locus) |
Drosophila
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| Node of Origin (family) |
Drosophila
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Genome context
(Dana_caf1) |
scaffold_12430: 12744-12809 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACGGAAAAAUGUACAAUGUUGGACUGUGCUUAAAGUAAAUAGUCUGGAUUGAUGAAAGUUGUAUUCGAGAAUUCAUCAACAGGCAUUUACUUCAACUGCAGUUCGAACGAAAUUCAACAGGAUAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACGGAAAAAUGUACAAUG--| GC A A GA AAGUUGUA
UUGGACUGU UU AAGUAAAU GUCUG UUGAUGA \
AGCUUGACG AA UUCAUUUA CGGAC AACUACU U
UAAUAGGACAACUUAAAGCA^ UC C - -- UAAGAGCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There are Dicer cuts +1 and -1. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Dan-Mir-987_5p |
| mirBase accession | None |
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| Sequence |
0- UAAAGUAAAUAGUCUGGAUUGAUGA -25
Get sequence
|
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| Star sequence |
Dan-Mir-987_3p* |
| mirBase accession | None |
|---|
| Sequence |
44- AUCAACAGGCAUUUACUUCAAC -66
Get sequence
|
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