MirGeneDB ID | Dan-Mir-987 |
Family name |
MIR-987 (all species) |
Seed |
AAAGUAA |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Dme-Mir-987
Dmo-Mir-987
Dsi-Mir-987
Dya-Mir-987
Gpa-Mir-987
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Glossinidae + Drosophilidae
|
Genome context (Dana_caf1) |
scaffold_12430: 12744-12809 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACGGAAAAAUGUACAAUGUUGGACUGUGCUUAAAGUAAAUAGUCUGGAUUGAUGAAAGUUGUAUUCGAGAAUUCAUCAACAGGCAUUUACUUCAACUGCAGUUCGAACGAAAUUCAACAGGAUAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACGGAAAAAUGUACAAUG--| GC A A GA AAGUUGUA
UUGGACUGU UU AAGUAAAU GUCUG UUGAUGA \
AGCUUGACG AA UUCAUUUA CGGAC AACUACU U
UAAUAGGACAACUUAAAGCA^ UC C - -- UAAGAGCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts +1 and -1. |
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Dan-Mir-987_5p |
mirBase accession | None |
Sequence |
0- UAAAGUAAAUAGUCUGGAUUGAUGA -25
Get sequence
|
Star sequence |
Dan-Mir-987_3p* |
mirBase accession | None |
Sequence |
44- AUCAACAGGCAUUUACUUCAAC -66
Get sequence
|