MirGeneDB ID | Dan-Novel-4 |
Family name |
DAN-NOVEL-4 (all species) |
Seed |
AGGAGAA |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
D. ananassae
|
Node of Origin (family) |
D. ananassae
|
Genome context (Dana_caf1) |
scaffold_12903: 550400-550461 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCACAUCCAGAAAAGUAUUAUCCUUUUGCAAGGAGAAUUUAAGCAGUGUAUGUUGGUAUUAACACACAUAGACUGCUAAUCUUCUUCUAUUGAAGGGAUAAUCGGAGCAACAAGUAGGUAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUCACAUCCAGAAAAGU--| CA UUUA G UUGGUA
AUUAUCCUUUUG AGGAGAA AGCAGU UAUG U
UAAUAGGGAAGU UCUUCUU UCGUCA AUAC U
UAUGGAUGAACAACGAGGC^ UA CUAA G ACACAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dan-Novel-4_5p |
mirBase accession | None |
Sequence |
0- AAGGAGAAUUUAAGCAGUGUAUG -23
Get sequence
|
Star sequence |
Dan-Novel-4_3p* |
mirBase accession | None |
Sequence |
39- UAGACUGCUAAUCUUCUUCUAUU -62
Get sequence
|