MirGeneDB ID | Dma-Novel-7 |
Family name |
DMA-NOVEL-7 (all species) |
Seed |
CCUGUUU |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
D. magna
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Node of Origin (family) |
D. magna
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Genome context (DMA_ASM399081) |
NC_046175.1: 6286077-6286139 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUUGACCCCUUUUGGGAGGGGGUGUGUGUAGCCUGUUUAGGGUCGUCAAGCGGUCCCCGAUCUCUAUUCCACGGGCUUCCUUCGACAGAGCAACAUCAAAGAGACAUCGCUCCAAAGUUGACC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUGACCCCUUUUGGGAGGGGG---| U A - U UC AAGC UCCCCGA
UG GUGU GC CUGUU AGGG GUC GG \
AC UACA CG GACAG UUCC CGG CC U
CCAGUUGAAACCUCGCUACAGAGAA^ - A A C UU GCA- UUAUCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Mature sequence |
Dma-Novel-7_5p |
mirBase accession | None |
Sequence |
0- GCCUGUUUAGGGUCGUCAAGCGG -23
Get sequence
|
Co-mature sequence |
Dma-Novel-7_3p |
mirBase accession | None |
Sequence |
40- ACGGGCUUCCUUCGACAGAGCAA -63
Get sequence
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