MirGeneDB ID | Dre-Mir-2189 |
Family name |
MIR-2189 (all species) |
Seed |
GAUUGUU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-2189
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
D. rerio
|
Node of Origin (family) |
D. rerio
|
Genome context (danRer11) |
chrUn_KN150127v1: 17180-17237 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCACAGUUUUGAUCCCGCCCAAAUUGAACACAGCUGAUGCAACCAAUCAAAUUGGUAACUAUUUUUGAUUGUUUGUAUCAGCUGUGUUUUAGUUAGGGCUUCUUCGUCCCUCUUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCACAGUUUUGAUCCC- A -| C UUGGU
GCCC AAUU GAACACAGCUGAUGCAA CAAUCAAA A
CGGG UUGA UUUGUGUCGACUAUGUU GUUAGUUU A
UCUUUCUCCCUGCUUCUU A U^ U UUAUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Dre-Mir-2189_5p* |
mirBase accession | None |
Sequence |
0- ACAGCUGAUGCAACCAAUCAAA -22
Get sequence
|
Mature sequence |
Dre-Mir-2189_3p |
mirBase accession | MIMAT0011311 |
Sequence |
36- UGAUUGUUUGUAUCAGCUGUGU -58
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-2189
|