MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-2189

Family name MIR-2189 (all species)
Seed GAUUGUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-2189
Paralogues
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) D. rerio
Genome context
(danRer11)
chrUn_KN150127v1: 17180-17237 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCACAGUUUUGAUCCCGCCCAAAUUGAACACAGCUGAUGCAACCAAUCAAAUUGGUAACUAUUUUUGAUUGUUUGUAUCAGCUGUGUUUUAGUUAGGGCUUCUUCGUCCCUCUUUCU
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Structure
        10         20         30        40        50        
UGCACAGUUUUGAUCCC-    A    -|                C        UUGGU 
                  GCCC AAUU GAACACAGCUGAUGCAA CAAUCAAA     A
                  CGGG UUGA UUUGUGUCGACUAUGUU GUUAGUUU     A
UCUUUCUCCCUGCUUCUU    A    U^                U        UUAUC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-2189_5p*

mirBase accessionNone
Sequence
0- ACAGCUGAUGCAACCAAUCAAA -22
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Mature sequence

Dre-Mir-2189_3p

mirBase accessionMIMAT0011311
Sequence
36- UGAUUGUUUGUAUCAGCUGUGU -58
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Proposed targets TargetScanFish: dre-miR-2189