MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-729

Family name MIR-729 (all species)
Seed AUGGGUA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-729
Paralogues
Orthologues Loc-Mir-729 
Node of Origin (locus) Neopterygii
Node of Origin (family) Neopterygii
Genome context
(danRer11)
chr4: 13584505-13584565 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAUGAACGUCAAGGGCCAUCCAGUGACCCGGGGUUGUAUUGUAACCAAGCUGUAAGUGUCCAUGAUGCAUGGGUAUGAUACGACCUGGGUUACAGAAUGGUGAUGGACAUCCUGGAAAU
Get precursor sequence
Structure
        10          20        30        40        50        60
UUCAUGAACGUCAAGGG--|   CCA          G      UG  A   A  UGUAAGU 
                   CCAU   GUGACCCGGG UUGUAU  UA CCA GC       G
                   GGUA   CAUUGGGUCC AGCAUA  AU GGU CG       U
UAAAGGUCCUACAGGUAGU^   AGA          -      GU  G   A  UAGUACC 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-729_5p*

mirBase accessionNone
Sequence
0- CGGGGUUGUAUUGUAACCAAGCU -23
Get sequence
Mature sequence

Dre-Mir-729_3p

mirBase accessionMIMAT0003758
Sequence
39- CAUGGGUAUGAUACGACCUGGG -61
Get sequence
Proposed targets TargetScanFish: dre-miR-729