| MirGeneDB ID | Loc-Mir-729 |
|---|
| Family name |
MIR-729 (all species) |
|---|
| Seed |
AUGGGUA |
|---|
| Species |
Spotted gar (Lepisosteus oculatus) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Dre-Mir-729
|
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| Node of Origin (locus) |
Neopterygii
|
|---|
| Node of Origin (family) |
Neopterygii
|
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Genome context
(LepOcu1) |
LG8: 10416305-10416363 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUCCCUGUGAAGACAAGUCUUUUCUUGACCCGGGGUUGUAAUAUAACCAAGCUGUGAUUUAUCAGUGCAUGGGUAUAAUACGACCUGGGCCAGGGGAGGACCACACAUGCGUUUGAGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUCCCUGUGAAGACAAG--| UU A G A A A UGUGAU
UCUU CUUG CCCGGG UUGUA UAUA CCA GC U
AGGA GGAC GGGUCC AGCAU AUAU GGU CG U
UCGAGUUUGCGUACACACC^ GG C - A G A UGACUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
| |
|
|
|---|
| Star sequence |
Loc-Mir-729_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CGGGGUUGUAAUAUAACCAAGCU -23
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-729_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CAUGGGUAUAAUACGACCUGGG -59
Get sequence
|
|---|
