MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-729

Family name MIR-729 (all species)
Seed AUGGGUA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Dre-Mir-729 
Node of Origin (locus) Neopterygii
Node of Origin (family) Neopterygii
Genome context
(LepOcu1)
LG8: 10416305-10416363 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCCUGUGAAGACAAGUCUUUUCUUGACCCGGGGUUGUAAUAUAACCAAGCUGUGAUUUAUCAGUGCAUGGGUAUAAUACGACCUGGGCCAGGGGAGGACCACACAUGCGUUUGAGCU
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Structure
        10          20        30        40        50         
GUCCCUGUGAAGACAAG--|   UU    A      G     A    A   A  UGUGAU 
                   UCUU  CUUG CCCGGG UUGUA UAUA CCA GC      U
                   AGGA  GGAC GGGUCC AGCAU AUAU GGU CG      U
UCGAGUUUGCGUACACACC^   GG    C      -     A    G   A  UGACUA 
       110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-729_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGGGUUGUAAUAUAACCAAGCU -23
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Mature sequence

Loc-Mir-729_3p (predicted)

mirBase accessionNone
Sequence
37- CAUGGGUAUAAUACGACCUGGG -59
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