MirGeneDB 3.0

MirGeneDB ID

Dre-Novel-1

Family name DRE-NOVEL-1 (all species)
Seed AUUUUCU
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) D. rerio
Genome context
(danRer11)
chr18: 15584378-15584438 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUUAAUGCAAUUGAACUGAUUAUUGUUGUUCUGAAAGAAAACAAAGUAGAUAUUAAAUCAAAUUUCUAUUUUCUUGACUUCAGACCAGCAAUGAGCGGAAAAAGAACAACUUUGUGUG
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Structure
        10          20        30        40        50        60
GUUUUUAAUGCAAUUGAA--|  A         U      A AA  C        UAUUAA 
                    CUG UUAUUGUUG UCUGAA G  AA AAAGUAGA      A
                    GGC AGUAACGAC AGACUU C  UU UUUUAUCU      U
GUGUGUUUCAACAAGAAAAA^  G         C      - AG  C        UUAAAC 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Novel-1_5p*

mirBase accessionNone
Sequence
0- GUUCUGAAAGAAAACAAAGUAGA -23
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Mature sequence

Dre-Novel-1_3p

mirBase accessionNone
Sequence
39- UAUUUUCUUGACUUCAGACCAG -61
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