MirGeneDB 3.0

MirGeneDB ID

Dre-Novel-2

Family name DRE-NOVEL-2 (all species)
Seed UAUGUGU
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) D. rerio
Genome context
(danRer11)
chr19: 6275796-6275851 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCGUAAUUGAAUAUGUGUUGCCCAGCUGUUUAUGUGUGUGUGAUUGGUCGCUGAUUUUGAAGUGGCUUGUUAGACACACUGGCACAGUAGGGUUGACUUUCAGGUUUAAUCAUGA
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Structure
        10         20         30        40        50       
GUCGUAAUUGAAUAUGU-   -|   A     UUAU      G    U       GAU 
                  GUU GCCC GCUGU    GUGUGU UGAU GGUCGCU   U
                  CAG UGGG UGACA    CACACA AUUG UCGGUGA   U
AGUACUAAUUUGGACUUU   U^   A     CGGU      G    U       AGU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Novel-2_5p

mirBase accessionNone
Sequence
0- UUAUGUGUGUGUGAUUGGUCGCU -23
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Star sequence

Dre-Novel-2_3p*

mirBase accessionNone
Sequence
33- UGGCUUGUUAGACACACUGGCAC -56
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