MirGeneDB 3.0

MirGeneDB ID

Dre-Novel-3

Family name DRE-NOVEL-3 (all species)
Seed CUGAUCA
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) D. rerio
Genome context
(danRer11)
chr17: 52860985-52861045 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCUGCAGAGUCGCACAGGAAAGCAAACAGCCCCGGUCUUGAAUCUGGUCCCAGACUAAACAUUUGGGCUGAUCAGUGACUGCGGCUGCUUGCAUGUCUGAUUCACGUCAGCAUUCAUU
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Structure
        10          20        30        40         50        60
CUGCCUGCAGAGUCGCA--    AAA    A     C     -|   A  U     CAGACU 
                   CAGG   GCAA CAGCC CGGUC UUGA UC GGUCC      A
                   GUCU   CGUU GUCGG GUCAG GACU AG UCGGG      A
UUACUUACGACUGCACUUA    GUA    C     C     U^   -  -     UUUACA 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Novel-3_5p*

mirBase accessionNone
Sequence
0- AGCCCCGGUCUUGAAUCUGGUCC -23
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Mature sequence

Dre-Novel-3_3p

mirBase accessionNone
Sequence
39- GCUGAUCAGUGACUGCGGCUGC -61
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