MirGeneDB 3.0

MirGeneDB ID

Dre-Novel-4

Family name DRE-NOVEL-4 (all species)
Seed CAGGAAU
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. rerio
Node of Origin (family) D. rerio
Genome context
(danRer11)
chr15: 37725346-37725406 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAUGGACCAUGUUUGUUACUUGUAGUUUACAGGAAUUUGGCCACUGCACUCUUUCAGAUAAGUUUGGUGCUGUGGCCAAAUUCCUGUAAACUUCAGUAAUUUAUUCAAUAAACAGCAGG
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Structure
        10           20        30        40        50          
AAUAUGGACCAUGUUUG---|    U U                     U     CUUUCAG 
                    UUACU G AGUUUACAGGAAUUUGGCCAC GCACU       \
                    AAUGA C UCAAAUGUCCUUAAACCGGUG CGUGG       A
GGACGACAAAUAACUUAUUU^    - U                     U     UUUGAAU 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Novel-4_5p

mirBase accessionNone
Sequence
0- ACAGGAAUUUGGCCACUGCACU -22
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Co-mature sequence

Dre-Novel-4_3p

mirBase accessionNone
Sequence
39- UGCUGUGGCCAAAUUCCUGUAA -61
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