MirGeneDB ID | Dre-Novel-4 |
Family name |
DRE-NOVEL-4 (all species) |
Seed |
CAGGAAU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
D. rerio
|
Node of Origin (family) |
D. rerio
|
Genome context (danRer11) |
chr15: 37725346-37725406 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUAUGGACCAUGUUUGUUACUUGUAGUUUACAGGAAUUUGGCCACUGCACUCUUUCAGAUAAGUUUGGUGCUGUGGCCAAAUUCCUGUAAACUUCAGUAAUUUAUUCAAUAAACAGCAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUAUGGACCAUGUUUG---| U U U CUUUCAG
UUACU G AGUUUACAGGAAUUUGGCCAC GCACU \
AAUGA C UCAAAUGUCCUUAAACCGGUG CGUGG A
GGACGACAAAUAACUUAUUU^ - U U UUUGAAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Mature sequence |
Dre-Novel-4_5p |
mirBase accession | None |
Sequence |
0- ACAGGAAUUUGGCCACUGCACU -22
Get sequence
|
Co-mature sequence |
Dre-Novel-4_3p |
mirBase accession | None |
Sequence |
39- UGCUGUGGCCAAAUUCCUGUAA -61
Get sequence
|