| MirGeneDB ID | Dre-Novel-5 |
|---|
| Family name |
DRE-NOVEL-5 (all species) |
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| Seed |
CAUGUCA |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. rerio
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| Node of Origin (family) |
D. rerio
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Genome context
(danRer11) |
chr9: 56359312-56359379 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGCUGACGGCUCAUGCUGGACUGUGGAGCUCAUGUCAGAUGUGAGAUGAGCGUGAUCAGAUUAUACCGCAGCACAUCUCCACUCAUCUGUCAUGAGCUUCACCUUUUACAGAAGCUUCAUUCAUUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGCUGACGGCUCAUGC-- CU U U---| A GUGAUCAGA
UGGA GUGGAGCUCAUG CAGAUG GAGAUG GC \
AUUU CACUUCGAGUAC GUCUAC CUCUAC CG U
CUUUACUUACUUCGAAGAC UC U UCAC^ A ACGCCAUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCAUGUCAGAUGUGAGAUGAGC -22
Get sequence
|
|---|
| Star sequence |
Dre-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- ACAUCUCCACUCAUCUGUCAUGAGC -68
Get sequence
|
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