| MirGeneDB ID | Dre-Novel-6 |
|---|
| Family name |
DRE-NOVEL-6 (all species) |
|---|
| Seed |
ACAAGGG |
|---|
| Species |
Zebrafish (Danio rerio) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
D. rerio
|
|---|
| Node of Origin (family) |
D. rerio
|
|---|
Genome context
(danRer11) |
chr3: 26193747-26193808 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGCAUAAAAAUAAACUUGGCUGCAUGUUUAAAGACAAACAGCGCUAGUACAGAGCAUGUAUUUAACUGUACAAGGGUUUGUUUGUGUUUGAUCACGUGGCUUGUUUGCGCCUUCUAAUAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGCAUAAAAAUAAACUU-- UG A U G -| G A GAGCAUG
GGC C UG UUAAA ACAAAC AGC CU GUACA \
UCG G AC AGUUU UGUUUG UUG GA CAUGU U
AUAUAAUCUUCCGCGUUUGU GU C U G U^ G A CAAUUUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Dre-Novel-6_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAAGACAAACAGCGCUAGUACA -22
Get sequence
|
|---|
| Mature sequence |
Dre-Novel-6_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UACAAGGGUUUGUUUGUGUUUGA -62
Get sequence
|
|---|
